Package index • rnaSentry

All functions
`build_signature()`	Build a prognostic gene signature from a survival cohort
`cox_model()`	Adjusted Cox proportional-hazards model for a signature
`design_audit()`	Audit candidate design covariates before differential-expression modeling
`fetch_gse20685()`	Fetch and process GSE20685 breast cancer cohort
`generate_report()`	Generate the rnaSentry analysis report
`km_curve()`	Kaplan-Meier survival analysis of a signature's risk groups
`load_counts()`	Validate and construct a SummarizedExperiment from count data
`lock_signature()`	Lock or unlock an rnaSentry signature
`pca_audit()`	PCA audit of expression data with optional batch association testing
`plot_pca_audit()`	Plot PCA scores from a pca_audit result
`qc_explore()`	Quality-control audit of a bulk RNA-seq SummarizedExperiment
`run_rnaSentry()`	Run the complete rnaSentry pipeline
`sex_check()`	Verify reported sex against inferred biological sex from expression
`survival_parametric()`	Parametric survival models for a signature's risk score
`validate_external()`	Validate a signature on an external cohort

Reference